Index

A

after_step() (detectree2.models.train.LossEvalHook method)

after_train() (detectree2.models.train.LossEvalHook method) average_polygons() (in module detectree2.models.outputs)

B

box_filter() (in module detectree2.models.outputs) box_make() (in module detectree2.models.outputs) build_evaluator() (detectree2.models.train.MyTrainer class method)

build_hooks() (detectree2.models.train.MyTrainer method) build_test_loader() (detectree2.models.train.MyTrainer class method) build_train_loader() (detectree2.models.train.MyTrainer class method)

C

calc_iou() (in module detectree2.models.outputs) clean_crowns() (in module detectree2.models.outputs) clean_outputs() (in module detectree2.models.outputs) clean_predictions() (in module detectree2.models.outputs)

combine_and_average_polygons() (in module detectree2.models.outputs) combine_dicts() (in module detectree2.models.train) crs (detectree2.models.outputs.GeoFile attribute) CRSType (class in detectree2.models.outputs) CustomTIFFDataset (class in detectree2.data_loading.custom)

D

detectree2 module detectree2.data_loading module detectree2.data_loading.custom module detectree2.data_loading.gdrive_load module detectree2.models module detectree2.models.evaluation module detectree2.models.models module detectree2.models.outputs module detectree2.models.predict module detectree2.models.test module

detectree2.models.train module detectree2.models.train_tune module detectree2.preprocessing module detectree2.preprocessing.crowns module detectree2.preprocessing.tiling module detectree2.tests module detectree2.tests.test_data module detectree2.tests.test_evaluation module detectree2.tests.test_models module detectree2.tests.test_predict module

F

f1_cal() (in module detectree2.models.evaluation) feat_threshold_tests() (in module detectree2.models.evaluation) feat_threshold_tests2() (in module detectree2.models.evaluation) feats_height_filt() (in module detectree2.models.evaluation)

Feature (class in detectree2.models.evaluation) features (detectree2.models.outputs.GeoFile attribute) filename_geoinfo() (in module detectree2.models.outputs) find_intersections() (in module detectree2.models.evaluation) FlexibleDatasetMapper (class in detectree2.models.train)

G

GeoFeature (class in detectree2.models.evaluation) GeoFile (class in detectree2.models.outputs) get_classes() (in module detectree2.models.train) get_detectron_instances() (detectree2.data_loading.custom.CustomTIFFDataset method) get_epsg() (in module detectree2.models.evaluation) get_features() (in module detectree2.preprocessing.tiling) get_filenames() (in module detectree2.models.train)

get_heights() (in module detectree2.models.evaluation) get_latest_model_path() (in module detectree2.models.train) get_tile_origin() (in module detectree2.models.evaluation) get_tile_width() (in module detectree2.models.evaluation) get_tree_dicts() (in module detectree2.models.train) get_tuple_coords() (detectree2.models.evaluation.Feature method) (detectree2.models.evaluation.GeoFeature method)

I

image_details() (in module detectree2.preprocessing.tiling) initialise_feats() (in module detectree2.models.evaluation)

initialise_feats2() (in module detectree2.models.evaluation) is_overlapping_box() (in module detectree2.preprocessing.tiling)

L

load_class_mapping() (in module detectree2.preprocessing.tiling) load_geopandas_dataframes() (in module detectree2.models.outputs)

load_json_arr() (in module detectree2.models.train) LossEvalHook (class in detectree2.models.train)

M

modify_conv1_weights() (in module detectree2.models.train) module detectree2 detectree2.data_loading detectree2.data_loading.custom detectree2.data_loading.gdrive_load detectree2.models detectree2.models.evaluation detectree2.models.models detectree2.models.outputs detectree2.models.predict detectree2.models.test detectree2.models.train detectree2.models.train_tune detectree2.preprocessing detectree2.preprocessing.crowns detectree2.preprocessing.tiling detectree2.tests detectree2.tests.test_data detectree2.tests.test_evaluation detectree2.tests.test_models detectree2.tests.test_predict

MyTrainer (class in detectree2.models.train)

N

normalize_polygon() (in module detectree2.models.outputs)

P

poly_area() (detectree2.models.evaluation.Feature method) (detectree2.models.evaluation.GeoFeature method) polygon_from_mask() (in module detectree2.models.outputs) positives_test() (in module detectree2.models.evaluation) post_clean() (in module detectree2.models.outputs) prec_recall() (in module detectree2.models.evaluation) predict_on_data() (in module detectree2.models.predict)

predictions_on_data() (in module detectree2.models.train) process_tile() (in module detectree2.preprocessing.tiling) process_tile_ms() (in module detectree2.preprocessing.tiling) process_tile_train() (in module detectree2.preprocessing.tiling) process_tile_train_helper() (in module detectree2.preprocessing.tiling) project_to_geojson() (in module detectree2.models.outputs) properties (detectree2.models.outputs.CRSType attribute)

R

record_classes() (in module detectree2.preprocessing.tiling) register_test_data() (in module detectree2.models.train)

register_train_data() (in module detectree2.models.train) remove_registered_data() (in module detectree2.models.train)

S

save_feats() (in module detectree2.models.evaluation) setup_cfg() (in module detectree2.models.train)

site_f1_score() (in module detectree2.models.evaluation) site_f1_score2() (in module detectree2.models.evaluation) stitch_crowns() (in module detectree2.models.outputs)

T

test_detectron2() (detectree2.tests.test_models.TestCase method) test_f1_cal() (detectree2.tests.test_predict.TestCase method) test_prec_recall_func() (detectree2.tests.test_predict.TestCase method) test_predict() (detectree2.tests.test_predict.TestCase method) test_site_f1_score() (in module detectree2.tests.test_evaluation) test_tree_feature() (in module detectree2.tests.test_evaluation) test_upper() (detectree2.tests.test_data.TestCase method) TestCase (class in detectree2.tests.test_data) (class in detectree2.tests.test_models) (class in detectree2.tests.test_predict)

tile_data() (in module detectree2.preprocessing.tiling) to_eval_geojson() (in module detectree2.models.outputs) to_traintest_folders() (in module detectree2.preprocessing.tiling) train() (detectree2.models.train.MyTrainer method) tree_height() (detectree2.models.evaluation.Feature method) (detectree2.models.evaluation.GeoFeature method) type (detectree2.models.outputs.CRSType attribute) (detectree2.models.outputs.GeoFile attribute)